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Aleksei Aksimentiev. "Deciphering ionic current signatures of DNA transport through a nanopore." Nanoscale 2:468-83 (2010).
Aleksei Aksimentiev, and Robert Hołyst. "Single chain conformations in the system of symmetric and asymmetric diblock copolymers." Macromolecular Theory and Simulations 8:328-342 (1999).
Aleksei Aksimentiev, Jiunn B. Heng, Gregory Timp, and Klaus Schulten. "Microscopic Kinetics of DNA Translocation through synthetic nanopores." Biophys J 87:2086-97 (2004).
Aleksei Aksimentiev, Krzysztof Moorthi, and Robert Hołyst. "Scaling properties of the morphological measures at the early and intermediate stages of the spinodal decomposition in homopolymer blends." The Journal of Chemical Physics 112:6049-6062 (2000).
Aleksei Aksimentiev, and Robert Hołyst. "Swelling and shrinking of polymer chains in homopolymer blends." Macromolecular Theory and Simulations 7:447-456 (1998).
Aleksei Aksimentiev, and Klaus Schulten. "Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map." Biophys J 88:3745-61 (2005).
Aleksei Aksimentiev, Robert Hołyst, and Krzysztof Moorthi. "Kinetics of the droplet formation at the early and intermediate stages of the spinodal decomposition in homopolymer blends." Macromolecular Theory and Simulations 9:661-674 (2000).
Aleksei Aksimentiev, and Robert Hołyst. "Influence of the free-energy functional form on simulated morphology of spinodally decomposing blends." Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics 62:6821-30 (2000).
Aleksei Aksimentiev, Robert Brunner, Jordi Cohen, Jeffrey Comer, Eduardo Cruz-Chú, David Hardy, Aruna Rajan, Amy Y. Shih, G Sigalov, Ying Yin, and Klaus Schulten. "Computer modeling in biotechnology: a partner in development." Methods Mol Biol 474:181-234 (2008).
Aleksei Aksimentiev, and Robert Hołyst. "Single-chain statistics in polymer systems." Progress in Polymer Science 24:1045-1093 (1999).
Aleksei Aksimentiev, Ilya A. Balabin, Robert H. Fillingame, and Klaus Schulten. "Insights into the molecular mechanism of rotation in the Fo sector of ATP synthase." Biophys J 86:1332-44 (2004).
Aleksei Aksimentiev, Robert Hołyst, and Marcin Fialkowski. "Morphology of surfaces in mesoscopic polymers, surfactants, electrons, or reaction-diffusion systems: Methods, simulation and measurements." Advances in Chemical Physics 121:141-239 (2002).
Aleksei Aksimentiev, Robert Brunner, Eduardo Cruz-Chú, Jeffrey Comer, and Klaus Schulten. "Modeling Transport Through Synthetic Nanopores." IEEE Nanotechnol Mag 3:20-28 (2009).
Aleksei Aksimentiev, and Robert Hołyst. "Phase behavior of gradient copolymers." The Journal of Chemical Physics 111:2329-2339 (1999).
Aleksei Aksimentiev, and Klaus Schulten. "Extending molecular modeling methodology to study insertion of membrane nanopores." Proc Natl Acad Sci U S A 101:4337-8 (2004).
Aleksei Aksimentiev, and Robert Hołyst. "Application of the Euler characteristic to the study of homopolymer blends and copolymer melts." Polimery 46:309-322 (2001).