• #00cccc
    Self-folding water filter
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    Infinite-depth sequencing of single nucleic acid molecules
  • #003366
    Mrdna: Multi-resolution DNA modeling package blends speed and accuracy for structure determination
  • #0000cc
    Nanopore recognition of the twenty amino acids
  • #009999
    Predicting energy production of entire photosynthetic organelle from atomic simulations
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    Artificial water channels enable rapid and selective water transport
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    Guiding the capture of DNA molecules and proteins
  • #333366
    Outperforming nature: synthetic enzyme built from DNA flips lipids of biological membranes at record rates
  • #ff9900
    Under Pressure: repellant nanopores
  • #000099
    Simulations capture diffusive substeps of a protein moving along ssDNA

Recent publications

Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Neural Network Nanopore Readout Processing

Kasra S Tabatabaei, Bach Pham, Chao Pan, Jingqian Liu, Shubham Chandak, Spencer A. Shorkey, Alvaro G. Hernandez, Aleksei Aksimentiev, Min Chen, Charles M. Schroeder, and Olgica Milenkovic
Nano Letters (2022)
DOI:10.1021/acs.nanolett.1c04203  BibTex

Multiple rereads of single proteins at single–amino acid resolution using nanopores

Henry Brinkerhoff, Albert S. W. Kang, Jingqian Liu, Aleksei Aksimentiev, and Cees Dekker
Science 374 1509-1513 (2021)
DOI:10.1021/acs.nanolett.1c04203  BibTex

Membrane Activity of a DNA-Based Ion Channel Depends on the Stability of Its Double-Stranded Structure

Diana Morzy, Himanshu Joshi, Sarah E. Sandler, Aleksei Aksimentiev, and Ulrich F. Keyser
Nano Letters 21(22) 9789-9796 (2021)
DOI:10.1021/acs.nanolett.1c03791  BibTex

DNA Origami Voltage Sensors for Transmembrane Potentials with Single-Molecule Sensitivity

Sarah E. Ochmann, Himanshu Joshi, Ece Büber, Henri G. Franquelim, Pierre Stegemann, Barbara Saccà, Ulrich F. Keyser, Aleksei Aksimentiev, and Philip Tinnefeld
Nano Letters 21(20) 8634-8641 (2021)
DOI:10.1021/acs.nanolett.1c02584  BibTex

Synthetic Macrocycle Nanopore for Potassium-Selective Transmembrane Transport

Dan Qiao, Himanshu Joshi, Huangtianzhi Zhu, Fushi Wang, Yang Xu, Jia Gao, Feihe Huang, Aleksei Aksimentiev, and Jiandong Feng
Journal of the American Chemical Society 143(39) 15975-15983 (2021)
DOI:10.1021/jacs.1c04910  BibTex