• #262cc9
    Infinite-depth sequencing of single nucleic acid molecules
  • #003366
    Mrdna: Multi-resolution DNA modeling package blends speed and accuracy for structure determination
  • #0000cc
    Nanopore recognition of the twenty amino acids
  • #009999
    Predicting energy production of entire photosynthetic organelle from atomic simulations
  • #ff9933
    Artificial water channels enable rapid and selective water transport
  • #00ccff
    Guiding the capture of DNA molecules and proteins
  • #333366
    Outperforming nature: synthetic enzyme built from DNA flips lipids of biological membranes at record rates
  • #ff9900
    Under Pressure: repellant nanopores
  • #000099
    Simulations capture diffusive substeps of a protein moving along ssDNA
  • #999999
    MD simulations link DNA flexibility to base modifications

Recent publications

Electrical unfolding of cytochrome during translocation through a nanopore constriction.

Prabhat Tripathi, Abdelkrim Benabbas, Behzad Mehrafrooz, Hirohito Yamazaki, Aleksei Aksimentiev, Paul M. Champion, and Meni Wanunu
Proc Natl Acad Sci U S A 118(17) (2021)
DOI:10.1073/pnas.2016262118  PMID:33883276  BibTex

Determining the In-Plane Orientation and Binding Mode of Single Fluorescent Dyes in DNA Origami Structures

Kristina Hübner, Himanshu Joshi, Aleksei Aksimentiev, Fernando D. Stefani, Philip Tinnefeld, and Guillermo P. Acuna
ACS Nano 15(3) 5109-5117 (2021)
DOI:https://doi.org/10.1021/acsnano.0c10259  BibTex

Translocation of DNA through Ultrathin Nanoslits

Wayne Yang, Boya Radha, Adnan Choudhary, Yi You, Gangaiah Mettela, Andre K. Geim, Aleksei Aksimentiev, Ashok Keerthi, and Cees Dekker
Advanced Materials 33(11) 2007682 (2021)
DOI:https://doi.org/10.1002/adma.202007682  BibTex

Chiral Systems Made from DNA

D Winogradoff, P‐Y Li, H Joshi, L Quednau, C Maffeo, and A Aksimentiev
Advanced Science 8(5) 2003113 (2021)
DOI:10.1002/advs.202003113  BibTex

High-Fidelity Capture, Threading, and Infinite-Depth Sequencing of Single DNA Molecules with a Double-Nanopore System

Adnan Choudhary, Himanshu Joshi, Han-Yi Chou, Kumar Sarthak, James Wilson, Christopher Maffeo, and Aleksei Aksimentiev
ACS Nano 14 15566-15576 (2020)
DOI:10.1021/acsnano.0c06191  BibTex